VDD meaning in General ?

General Miscellaneous in General . 2 months ago

  737   0   0   0   0 tuteeHUB earn credit +10 pts

5 Star Rating 1 Rating
What is Voronoi deformation density mean?

Voronoi deformation density (VDD) is a method employed in computational chemistry to compute the atomic charge distribution of a molecule in order to provide information about its chemical properties. The method is based on the partitioning of space into non-overlapping atomic areas modelled as Voronoi cells and then computing the deformation density within those cells (i.e. the extent to which electron density differs from that of an unbonded atom).

The VDD charge QA of atom A is computed as the (numerical) integral of the deformation density ∆ρ(r) = ρ(r) – ΣBρB(r) associated with the formation of the molecule from its atoms over the volume of the Voronoi cell of atom A:

Q A = − ∫ Voronoi cell A ( ρ ( r ) − ∑ B ρ B ( r ) ) d r {\displaystyle Q_{A}=-\int \limits _{{\text{Voronoi cell }}A}{\Big (}\rho (\mathbf {r} )-\sum _{B}\rho _{B}(\mathbf {r} ){\Big )}d\mathbf {r} }

The Voronoi cell of atom A is defined as the compartment of space bounded by the bond midplanes on and perpendicular to all bond axes between nucleus A and its neighboring nuclei (cf. the Wigner–Seitz cells in crystals). The Voronoi cell of atom A is therefore the region of space closer to nucleus A than to any other nucleus. Furthermore, ρ(r) is the electron density of the molecule and ΣBρB(r) the superposition of atomic densities ρB of a fictitious promolecule without chemical interactions that is associated with the situation in which all atoms are neutral.

Note that an atomic charge is not a physical observable. Nevertheless, it has been proven a useful means to compactly describe and analyze the electron density distribution in a molecule, which is important for understanding the behavior of the latter. In this connection, it is an asset of VDD atomic charges QA that they have a rather straightforward and transparent interpretation. Instead of measuring the amount of charge associated with a particular atom A, QA directly monitors how much charge flows, due to chemical interactions, out of (QA > 0) or into (QA < 0) the Voronoi cell of atom A, that is, the region of space that is closer to nucleus A than to any other nucleus.

reference

Posted on 08 Nov 2024, this text provides information on General related to Miscellaneous in General. Please note that while accuracy is prioritized, the data presented might not be entirely correct or up-to-date. This information is offered for general knowledge and informational purposes only, and should not be considered as a substitute for professional advice.

Take Quiz To Earn Credits!

Turn Your Knowledge into Earnings.

tuteehub_quiz

Tuteehub forum answer Answers

Post Answer

No matter what stage you're at in your education or career, TuteeHub will help you reach the next level that you're aiming for. Simply,Choose a subject/topic and get started in self-paced practice sessions to improve your knowledge and scores.